variant_tools 3.1.3-foss-2019b-Python-3.7.4

Variant tools is a software tool for the manipulation, annotation, selection, simulation, and analysis of variants in the context of next-gen sequencing analysis. Unlike some other tools used for Next-Gen sequencing analysis, variant tools is project based and provides a whole set of tools to manipulate and analyze genetic variants.

Accessing variant_tools 3.1.3-foss-2019b-Python-3.7.4

To load the module for variant_tools 3.1.3-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load variant_tools/3.1.3-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the variant_tools website.

Dependencies

This version of variant_tools has a direct dependency on: Boost/1.71.0-gompi-2019b foss/2019b GSL/2.6-GCC-8.3.0 HDF5/1.10.5-gompi-2019b PycURL/7.43.0.5-GCCcore-8.3.0-Python-3.7.4 PyTables/3.6.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 PyZMQ/18.1.1-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4

Last modified on 1st September 2020