mappy 2.17-foss-2019b-Python-3.7.4

This repository also provides Python bindings to a subset of C APIs. File python/README.rst gives the full documentation; python/minimap2.py shows an example. This Python extension, mappy, is also available from PyPI

Accessing mappy 2.17-foss-2019b-Python-3.7.4

To load the module for mappy 2.17-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load mappy/2.17-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the mappy website.

Dependencies

This version of mappy has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0

Required By

This version of mappy is a direct dependent of: tombo/7473afe-foss-2019b-Python-3.7.4-cowplot tombo/1.5.1-foss-2019b-Python-3.7.4

Other Versions

These versions of mappy are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th May 2020