tombo 7473afe-foss-2019b-Python-3.7.4-cowplot

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Accessing tombo 7473afe-foss-2019b-Python-3.7.4-cowplot

To load the module for tombo 7473afe-foss-2019b-Python-3.7.4-cowplot please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load tombo/7473afe-foss-2019b-Python-3.7.4-cowplot

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Plotting Uses Cowplot

This version of tombo is set to use cowplot for plotting in the plotMotifStats.R script.

More Information

For more information visit the tombo website.

Dependencies

This version of tombo has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 mappy/2.17-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/3.2.6-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0

Other Versions

These versions of tombo are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th August 2020