flashpca 20200910-foss-2019b

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

Accessing flashpca 20200910-foss-2019b

To load the module for flashpca 20200910-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load flashpca/20200910-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the flashpca website.

Dependencies

This version of flashpca has a direct dependency on: Boost/1.71.0-gompi-2019b Eigen/3.3.7 foss/2019b PLINK/2.00-alpha2-x86_64 Spectra/0.9.0

Last modified on 28th October 2020