snakemake 8.27.0-foss-2024a

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Accessing snakemake 8.27.0-foss-2024a

To load the module for snakemake 8.27.0-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load snakemake/8.27.0-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • argparse-dataclass-2.0.0
  • conda-inject-1.3.2
  • ConfigArgParse 1.7
  • connection-pool-0.0.3
  • datrie 0.8.2
  • dpath 2.2.0
  • fastjsonschema 2.19.1
  • humanfriendly 10.0
  • immutables 0.21
  • jupyter-core-5.7.2
  • nbformat 5.10.4
  • plac 1.4.3
  • reretry 0.11.8
  • smart-open-7.1.0
  • snakemake 8.27.0
  • snakemake-executor-plugin-cluster-generic-1.0.9
  • snakemake-executor-plugin-cluster-sync-0.1.4
  • snakemake-executor-plugin-flux-0.1.1
  • snakemake-executor-plugin-slurm-0.12.0
  • snakemake-executor-plugin-slurm-jobstep-0.2.1
  • snakemake-interface-common-1.17.4
  • snakemake-interface-executor-plugins-9.3.3
  • snakemake-interface-report-plugins-1.1.0
  • snakemake-interface-storage-plugins-3.3.0
  • stopit 1.1.2
  • throttler 1.2.2
  • toposort 1.10
  • yte 1.5.5

More Information

For more information visit the snakemake website.

Dependencies

This version of snakemake has a direct dependency on: foss/2024a GitPython/3.1.43-GCCcore-13.3.0 IPython/8.28.0-GCCcore-13.3.0 PuLP/2.8.0-foss-2024a Python/3.12.3-GCCcore-13.3.0 Python-bundle-PyPI/2024.06-GCCcore-13.3.0 PyYAML/6.0.2-GCCcore-13.3.0 SciPy-bundle/2024.05-gfbf-2024a wrapt/1.16.0-gfbf-2024a

Other Versions

These versions of snakemake are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 31st July 2026