snakemake 5.2.4-foss-2018b-Python-3.6.6

Deprecated: Use of this version of snakemake is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of snakemake

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Accessing snakemake 5.2.4-foss-2018b-Python-3.6.6

To load the module for snakemake 5.2.4-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load snakemake/5.2.4-foss-2018b-Python-3.6.6

BEAR Apps Version

2018b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • appdirs 1.4.3
  • ConfigArgParse 0.13.0
  • datrie 0.7.1
  • docutils 0.14
  • jsonschema 2.6.0
  • ratelimiter 1.2.0.post0
  • snakemake 5.2.4
  • wrapt 1.10.11

More Information

For more information visit the snakemake website.

Dependencies

This version of snakemake has a direct dependency on: foss/2018b GitPython/2.1.11-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b PyYAML/3.13-foss-2018b-Python-3.6.6

Required By

This version of snakemake is a direct dependent of: amplimap/0.4.16-foss-2018b-Python-3.6.6

Other Versions

These versions of snakemake are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
5.31.1-foss-2020a-Python-3.8.2 2020a

Last modified on 19th February 2021