flappieFlip-flop basecaller for Oxford Nanopore reads
RunnieRunnie is an experimental basecaller that works in 'run-length encoded' space. Basecalling using runnie is a two-stage process: firstly, a .run file is created containing the Run-Length Compressed (RLC) basecall, along information about the likely length of each run, then this is decoded into a fasta basecall. The executable
runnieperforms the initial RLC basecall, which is then processed by the
For more information visit the flappie website.
These versions of flappie are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.