FLASH 1.2.11-GCC-8.3.0

FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data.

Accessing FLASH 1.2.11-GCC-8.3.0

To load the module for FLASH 1.2.11-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load FLASH/1.2.11-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the FLASH website.

Dependencies

This version of FLASH has a direct dependency on: GCC/8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of FLASH is a direct dependent of: shovill/1.1.0-foss-2019b-Python-3.7.4

Last modified on 11th November 2020