shovill 1.1.0-foss-2019b-Python-3.7.4
Faster SPAdes assembly of Illumina readsAccessing shovill 1.1.0-foss-2019b-Python-3.7.4
To load the module for shovill 1.1.0-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load shovill/1.1.0-foss-2019b-Python-3.7.4
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the shovill website.
Dependencies
This version of shovill has a direct dependency on: BWA/0.7.17-GCC-8.3.0 FLASH/1.2.11-GCC-8.3.0 foss/2019b KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4 Lighter/1.1.2-foss-2019b Mash/2.2-foss-2019b MEGAHIT/1.2.8-GCCcore-8.3.0 pigz/2.4-GCCcore-8.3.0 Pilon/1.23-Java-11 Python/3.7.4-GCCcore-8.3.0 samclip/0.4.0-GCCcore-8.3.0-Perl-5.30.0 SAMtools/1.10-GCC-8.3.0 seqtk/1.3-GCC-8.3.0 SKESA/2.4.0-foss-2019b SPAdes/3.14.1-GCC-8.3.0-Python-3.7.4 Trimmomatic/0.39-Java-11 Velvet/1.2.10-foss-2019b-mt-kmer_191
Last modified on 11th November 2020