SKESA 2.4.0-foss-2019b

SKESA is a de-novo sequence read assembler for cultured single isolate genomes based on DeBruijn graphs.

Accessing SKESA 2.4.0-foss-2019b

To load the module for SKESA 2.4.0-foss-2019b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SKESA/2.4.0-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SKESA website.

Dependencies

This version of SKESA has a direct dependency on: Boost/1.71.0-gompi-2019b foss/2019b ncbi-vdb/2.10.4-gompi-2019b NGS/2.10.4-GCCcore-8.3.0-Java-11

Required By

This version of SKESA is a direct dependent of: shovill/1.1.0-foss-2019b-Python-3.7.4

Last modified on 11th November 2020