SKESA 2.4.0-foss-2019bSKESA is a de-novo sequence read assembler for cultured single isolate genomes based on DeBruijn graphs.
Accessing SKESA 2.4.0-foss-2019b
To load the module for SKESA 2.4.0-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SKESA/2.4.0-foss-2019b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the SKESA website.
This version of SKESA has a direct dependency on: Boost/1.71.0-gompi-2019b foss/2019b ncbi-vdb/2.10.4-gompi-2019b NGS/2.10.4-GCCcore-8.3.0-Java-11
This version of SKESA is a direct dependent of: shovill/1.1.0-foss-2019b-Python-3.7.4
Last modified on 11th November 2020