There is a newer version of NGSNGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
Accessing NGS 2.10.4-GCCcore-8.3.0-Java-11
To load the module for NGS 2.10.4-GCCcore-8.3.0-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load NGS/2.10.4-GCCcore-8.3.0-Java-11
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the NGS website.
This version of NGS has a direct dependency on: GCCcore/8.3.0 Java/11
This version of NGS is a direct dependent of: Centrifuge/1.0.4-beta-gompi-2019b HISAT2/2.2.1-foss-2019b ncbi-vdb/2.10.4-gompi-2019b SKESA/2.4.0-foss-2019b
These versions of NGS are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 30th July 2020