NanoMod 0.2.2-foss-2019b-Python-2.7.16

NanoMod is a novel computational tool for the detection of DNA modifications using Nanopore long-read sequencing data. The evaluation on simulation data with different types of modifications and on a methylation data of E. coli suggested that NanoMod achieved better performance than other existing tools in detecting modifications without training data.

Accessing NanoMod 0.2.2-foss-2019b-Python-2.7.16

To load the module for NanoMod 0.2.2-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load NanoMod/0.2.2-foss-2019b-Python-2.7.16

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the NanoMod website.

Dependencies

This version of NanoMod has a direct dependency on: BWA/0.7.17-GCC-8.3.0 foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 HDF5/1.10.5-gompi-2019b Python/2.7.16-GCCcore-8.3.0 R/3.6.2-foss-2019b rpy2/2.8.6-foss-2019b-Python-2.7.16 SciPy-bundle/2019.10-foss-2019b-Python-2.7.16

Last modified on 27th July 2020