RNA_MUTECT 1.0-foss-2019a

RNA-MuTect pipeline

Accessing RNA_MUTECT 1.0-foss-2019a

To load the module for RNA_MUTECT 1.0-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load RNA_MUTECT/1.0-foss-2019a

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the RNA_MUTECT website.


This version of RNA_MUTECT has a direct dependency on: BamTools/2.5.1-foss-2019a foss/2019a HISAT2/2.1.0-foss-2019a MCR/R2016a MuTect/1.1.7-Java-11 PLINKSEQ/0.10-GCC-8.2.0-2.31.1 SAMtools/1.9-GCC-8.2.0-2.31.1

Last modified on 1st August 2019