stringtie 3.0.3-GCC-14.3.0

Stringtie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome. It takes as input spliced alignments in coordinate-sorted SAM/BAM/CRAM format and produces a GTF output which consists of assembled transcript structures and their estimated expression levels (FPKM/TPM and base coverage values).

Accessing stringtie 3.0.3-GCC-14.3.0

To load the module for stringtie 3.0.3-GCC-14.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2025b
module load stringtie/3.0.3-GCC-14.3.0

BEAR Apps Version

2025b

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the stringtie website.

Dependencies

This version of stringtie has a direct dependency on: GCC/14.3.0 zlib/1.3.1-GCCcore-14.3.0

Last modified on 27th October 2026