MetaXcan 0.7.3-foss-2019b-Python-3.7.4

MetaXcan is a set of tools to integrate genomic information of biological mechanisms with complex traits.

Accessing MetaXcan 0.7.3-foss-2019b-Python-3.7.4

To load the module for MetaXcan 0.7.3-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load MetaXcan/0.7.3-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • bgen-reader-3.0.7
  • cachetools 4.1.1
  • coloredlogs 14.0
  • cyvcf2 0.20.9
  • h5py-cache-1.0
  • humanfriendly 8.2
  • MetaXcan 0.7.3
  • pytest-runner-5.2
  • scipy 1.2.3
  • texttable 1.6.3

More Information

For more information visit the MetaXcan website.

Dependencies

This version of MetaXcan has a direct dependency on: cURL/7.66.0-GCCcore-8.3.0 dask/2.8.0-foss-2019b-Python-3.7.4 foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 limix-bgen/3.0.3-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 statsmodels/0.11.0-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0 xarray/0.15.1-foss-2019b-Python-3.7.4

Last modified on 30th October 2020