BEAR Applications

MPI3SNP f03aecf-foss-2019b

MPI3SNP is a parallel software tool dedicated to genome-wide association studies, performing a third-order exhaustive search. It is targeted to cluster architectures, and mitigates the cubic time complexity inherent to third-order searches by exploiting the several layers of parallelism present in a supercomputer.

Accessing MPI3SNP f03aecf-foss-2019b

To load the module for MPI3SNP f03aecf-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load MPI3SNP/f03aecf-foss-2019b

There is a GPU enabled version of this module: MPI3SNP f03aecf-fosscuda-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the MPI3SNP website.

Dependencies

This version of MPI3SNP has a direct dependency on: foss/2019b

Other Versions

These versions of MPI3SNP are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th October 2020