kseq 20221202

This tool further trims the reads by 6 nt to get rid of the problem of possible adapter run-through. It is a single component from the CutRunTools suite.

Accessing kseq 20221202

To load the module for kseq 20221202 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load kseq/20221202

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the kseq website.


This version of kseq has a direct dependency on: zlib/1.2.11

Last modified on 5th December 2022