ECTyper 2.0.0-foss-2024a

ECTyper is a standalone versatile serotyping module for Escherichia coli. It supports both fasta (assembled) and fastq (raw reads) file formats.

Accessing ECTyper 2.0.0-foss-2024a

To load the module for ECTyper 2.0.0-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load ECTyper/2.0.0-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the ECTyper website.

Dependencies

This version of ECTyper has a direct dependency on: BCFtools/1.21-GCC-13.3.0 Biopython/1.84-gfbf-2024a BLAST+/2.16.0-gompi-2024a Bowtie2/2.5.4-GCC-13.3.0 foss/2024a Python/3.12.3-GCCcore-13.3.0 SAMtools/1.21-GCC-13.3.0 SciPy-bundle/2024.05-gfbf-2024a seqtk/1.4-GCC-13.3.0

Required By

This version of ECTyper is a direct dependent of: Kleborate/3.2.4-foss-2024a

Last modified on 5th June 2026