DPClust 2.2.8-foss-2019a-R-3.6.0

This R package contains methods for subclonal reconstruction through SNVs and/or CNAs from whole genome or whole exome sequencing data.

Accessing DPClust 2.2.8-foss-2019a-R-3.6.0

To load the module for DPClust 2.2.8-foss-2019a-R-3.6.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load DPClust/2.2.8-foss-2019a-R-3.6.0

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • DPClust 2.2.8

More Information

For more information visit the DPClust website.

Dependencies

This version of DPClust has a direct dependency on: foss/2019a R/3.6.0-foss-2019a R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0

Last modified on 4th December 2019