panaroo 1.6.0-foss-2024a

A pangenome analysis pipeline.

Accessing panaroo 1.6.0-foss-2024a

To load the module for panaroo 1.6.0-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load panaroo/1.6.0-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• argcomplete 2.0.0
• argh 0.27.2
• biocode 0.11.0
• gffutils 0.13
• intbitset 3.1.0
• panaroo 1.6.0
• peewee 3.17.6
• taxadb 0.12.1

More Information

For more information visit the panaroo website.

Dependencies

This version of panaroo has a direct dependency on: Biopython/1.84-gfbf-2024a CD-HIT/4.8.1-GCC-13.3.0 DendroPy/5.0.1-GCCcore-13.3.0 edlib/1.3.9.post1-GCC-13.3.0 foss/2024a matplotlib/3.9.2-gfbf-2024a networkx/3.4.2-gfbf-2024a plotly.py/5.24.1-GCCcore-13.3.0 PRANK/251117-GCC-13.3.0 prokka/1.15.6-gompi-2024a pyfaidx/0.8.1.2-GCCcore-13.3.0 Python/3.12.3-GCCcore-13.3.0 python-igraph/0.11.9-foss-2024a scikit-learn/1.5.2-gfbf-2024a SciPy-bundle/2024.05-gfbf-2024a tqdm/4.66.5-GCCcore-13.3.0

Other Versions

These versions of panaroo are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 15th May 2026