pavian 81d784d-foss-2019b-R-3.6.2

Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Pavian also provides an alignment viewer for validation of matches to a particular genome.

Accessing pavian 81d784d-foss-2019b-R-3.6.2

To load the module for pavian 81d784d-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load pavian/81d784d-foss-2019b-R-3.6.2

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.


  • d3r 0.9.0
  • pavian 81d784d
  • rhandsontable 0.3.7
  • sankeyD3 fd50a74
  • shinyFileTree 76c44e7
  • shinyjs 1.1
  • shinyWidgets 0.5.3

More Information

For more information visit the pavian website.


This version of pavian has a direct dependency on: foss/2019b Pandoc/2.5 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2

Last modified on 25th June 2020