pavian 81d784d-foss-2019b-R-3.6.2Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Pavian also provides an alignment viewer for validation of matches to a particular genome.
Accessing pavian 81d784d-foss-2019b-R-3.6.2
To load the module for pavian 81d784d-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load pavian/81d784d-foss-2019b-R-3.6.2
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- d3r 0.9.0
- pavian 81d784d
- rhandsontable 0.3.7
- sankeyD3 fd50a74
- shinyFileTree 76c44e7
- shinyjs 1.1
- shinyWidgets 0.5.3
For more information visit the pavian website.
Last modified on 25th June 2020