DeNovoGear 387354d-foss-2018b

Deprecated: Use of this version of DeNovoGear is deprecated. More information on our Applications Support and Retention Policy.

DeNovoGear is a software package to detect somatic and germline *de novo* mutations using next-generation sequencing data. It uses advanced statistical models to reduce the false positive rate and supports the analysis of many differential experimental designs.

Accessing DeNovoGear 387354d-foss-2018b

To load the module for DeNovoGear 387354d-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load DeNovoGear/387354d-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the DeNovoGear website.

Dependencies

This version of DeNovoGear has a direct dependency on: Boost/1.67.0-foss-2018b Eigen/3.3.5 foss/2018b HTSlib/1.9-foss-2018b

Required By

This version of DeNovoGear is a direct dependent of: HAPDeNovo/fe8bcc2-foss-2018b-Python-3.6.6

Last modified on 4th June 2019