IsoformSwitchAnalyzeR 1.2.0-foss-2018b-R-3.5.1

Deprecated: Use of this version of IsoformSwitchAnalyzeR is deprecated. More information on our Applications Support and Retention Policy.

IsoformSwitchAnalyzeR enables identification and analysis of alternative splicing and isoform switches with predicted functional consequence from quantification by Cufflinks/Cuffdiff etc.

Accessing IsoformSwitchAnalyzeR 1.2.0-foss-2018b-R-3.5.1

To load the module for IsoformSwitchAnalyzeR 1.2.0-foss-2018b-R-3.5.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load IsoformSwitchAnalyzeR/1.2.0-foss-2018b-R-3.5.1

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • DEXSeq 1.26.0
  • DRIMSeq 1.8.0
  • IsoformSwitchAnalyzeR 1.2.0

More Information

For more information visit the IsoformSwitchAnalyzeR website.

Dependencies

This version of IsoformSwitchAnalyzeR has a direct dependency on: foss/2018b R/3.5.1-foss-2018b R-bundle-Bioconductor/3.7-foss-2018b-R-3.5.1

Last modified on 17th June 2019