PfamScan 20170301-foss-2018b-Perl-5.28.0

Deprecated: Use of this version of PfamScan is deprecated. More information on our Applications Support and Retention Policy.

PfamScan is used to search a FASTA sequence against a library of Pfam HMM.

Accessing PfamScan 20170301-foss-2018b-Perl-5.28.0

To load the module for PfamScan 20170301-foss-2018b-Perl-5.28.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load PfamScan/20170301-foss-2018b-Perl-5.28.0

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the PfamScan website.

Dependencies

This version of PfamScan has a direct dependency on: BioPerl/1.7.2-foss-2018b-Perl-5.28.0 foss/2018b HMMER/3.2.1-foss-2018b Perl/5.28.0-GCCcore-7.3.0

Last modified on 17th June 2019