Scoary 1.6.16-foss-2018b-Python-3.6.6

Deprecated: Use of this version of Scoary is deprecated. More information on our Applications Support and Retention Policy.

Microbial pan-GWAS using the output from Roary

Accessing Scoary 1.6.16-foss-2018b-Python-3.6.6

To load the module for Scoary 1.6.16-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Scoary/1.6.16-foss-2018b-Python-3.6.6

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.


  • argparse 1.4.0
  • ete3 3.1.1
  • Scoary 1.6.16

More Information

For more information visit the Scoary website.


This version of Scoary has a direct dependency on: foss/2018b Python/3.6.6-foss-2018b Tkinter/3.6.6-foss-2018b-Python-3.6.6

Last modified on 5th June 2019