SeqAn 2.4.0-foss-2018b

Deprecated: Use of this version of SeqAn is deprecated. More information on our Applications Support and Retention Policy.

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data

Accessing SeqAn 2.4.0-foss-2018b

To load the module for SeqAn 2.4.0-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SeqAn/2.4.0-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the SeqAn website.

Dependencies

This version of SeqAn has a direct dependency on: bzip2/1.0.6-GCCcore-7.3.0 foss/2018b zlib/1.2.11-GCCcore-7.3.0

Required By

This version of SeqAn is a direct dependent of: OptiType/1.3.2-foss-2018b-Python-2.7.15 OptiType/1.3.2-foss-2018b-Python-3.6.6

Last modified on 5th June 2019