TDA 1.6.5-foss-2018b-R-3.5.1

Deprecated: Use of this version of TDA is deprecated. More information on our Applications Support and Retention Policy.

Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' , 'Dionysus' , and 'PHAT' . This package also implements the methods in Fasy et al. (2014) and Chazal et al. (2014) for analyzing the statistical significance of persistent homology features.

Accessing TDA 1.6.5-foss-2018b-R-3.5.1

To load the module for TDA 1.6.5-foss-2018b-R-3.5.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load TDA/1.6.5-foss-2018b-R-3.5.1

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • BH-1.69.0-1
  • TDA 1.6.5

More Information

For more information visit the TDA website.

Dependencies

This version of TDA has a direct dependency on: foss/2018b MPFR/4.0.1-GCCcore-7.3.0 R/3.5.1-foss-2018b

Last modified on 5th June 2019