TopHat 2.1.2-foss-2018b

Deprecated: Use of this version of TopHat is deprecated. More information on our Applications Support and Retention Policy.

TopHat is a fast splice junction mapper for RNA-Seq reads.

Accessing TopHat 2.1.2-foss-2018b

To load the module for TopHat 2.1.2-foss-2018b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load TopHat/2.1.2-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the TopHat website.

Dependencies

This version of TopHat has a direct dependency on: Boost/1.67.0-foss-2018b foss/2018b zlib/1.2.11-GCCcore-7.3.0

Last modified on 5th June 2019