BEAR Applications

VMD 1.9.4a12-foss-2018b-Python-2.7.15

Deprecated: Use of this version of VMD is deprecated. More information on our Applications Support and Retention Policy.

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

Accessing VMD 1.9.4a12-foss-2018b-Python-2.7.15

To load the module for VMD 1.9.4a12-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load VMD/1.9.4a12-foss-2018b-Python-2.7.15

There is a GPU enabled version of this module: VMD 1.9.4a12-fosscuda-2018b-Python-2.7.15

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the VMD website.

Dependencies

This version of VMD has a direct dependency on: ACTC/1.1-GCCcore-7.3.0 FFmpeg/4.0-foss-2018b FLTK/1.3.4-foss-2018b foss/2018b ImageMagick/7.0.8-27-GCCcore-7.3.0 Mesa/18.1.1-foss-2018b netCDF/4.6.1-foss-2018b Python/2.7.15-foss-2018b Tcl/8.6.8-GCCcore-7.3.0 Tk/8.6.8-GCCcore-7.3.0

Other Versions

These versions of VMD are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th June 2019