fast5_fetcher 1.1.1-foss-2018b-Python-2.7.15

Deprecated: Use of this version of fast5_fetcher is deprecated. More information on our Applications Support and Retention Policy.

fast5_fetcher is a tool for fetching nanopore fast5 files to save time and simplify downstream analysis.

Accessing fast5_fetcher 1.1.1-foss-2018b-Python-2.7.15

To load the module for fast5_fetcher 1.1.1-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load fast5_fetcher/1.1.1-foss-2018b-Python-2.7.15

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the fast5_fetcher website.

Dependencies

This version of fast5_fetcher has a direct dependency on: foss/2018b Python/2.7.15-foss-2018b

Last modified on 4th June 2019