GeoMxNGSPipeline 2.0

There is a newer install of GeoMxNGSPipeline

The GeoMx NGS Pipeline uses a series of novel algorithms to process sequencing files from FASTQ to the Digital Count Conversion (DCC) file format that is read by the DSP instrument for further analysis

Accessing GeoMxNGSPipeline 2.0

To load the module for GeoMxNGSPipeline 2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load GeoMxNGSPipeline/2.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the GeoMxNGSPipeline website.

Other Versions

These versions of GeoMxNGSPipeline are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th December 2020