There is a newer version of MRtrixMRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.
Accessing MRtrix 3.0-rc-20200326-foss-2019b-Python-3.7.4
To load the module for MRtrix 3.0-rc-20200326-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load MRtrix/3.0-rc-20200326-foss-2019b-Python-3.7.4
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the MRtrix website.
This version of MRtrix has a direct dependency on: foss/2019b LibTIFF/4.0.10-GCCcore-8.3.0 Mesa/19.1.7-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0 Qt5/5.13.1-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0
These versions of MRtrix are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 27th March 2020