Bonito 0.8.1-foss-2023a-CUDA-12.1.1

Convolution Basecaller for Oxford Nanopore Reads

Accessing Bonito 0.8.1-foss-2023a-CUDA-12.1.1

To load the module for Bonito 0.8.1-foss-2023a-CUDA-12.1.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load Bonito/0.8.1-foss-2023a-CUDA-12.1.1

BEAR Apps Version

2023a

Architectures

EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• fast-ctc-decode-0.3.6
• mappy 2.28
• ont-bonito-0.8.1
• ont_koi 0.4.4

More Information

For more information visit the Bonito website.

Last modified on 16th June 2025