Bracken 2.9-GCCcore-12.3.0

Bracken is a companion program to Kraken 1 or Kraken 2. While Kraken classifies reads to multiple levels in the taxonomic tree, Bracken allows estimation of abundance at a single level using those classifications (e.g. Bracken can estimate abundance of species within a sample).

Accessing Bracken 2.9-GCCcore-12.3.0

To load the module for Bracken 2.9-GCCcore-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load Bracken/2.9-GCCcore-12.3.0

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Bracken website.

Dependencies

This version of Bracken has a direct dependency on: GCCcore/12.3.0

Other Versions

These versions of Bracken are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 18th February 2025