CONCOCT 1.1.0-foss-2023a-Python-2.7.18
Clustering cONtigs with COverage and ComposiTion (CONCOCT) is a program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.Accessing CONCOCT 1.1.0-foss-2023a-Python-2.7.18
To load the module for CONCOCT 1.1.0-foss-2023a-Python-2.7.18 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load CONCOCT/1.1.0-foss-2023a-Python-2.7.18
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- CONCOCT 1.1.0
- nose 1.3.7
More Information
For more information visit the CONCOCT website.
Dependencies
This version of CONCOCT has a direct dependency on: BEDTools/2.31.0-GCC-12.3.0 Biopython/1.76-foss-2023a-Python-2.7.18 Bowtie2/2.5.4-GCC-12.3.0-Python-2.7.18 CheckM/1.0.18-foss-2023a-Python-2.7.18 foss/2023a GSL/2.7-GCC-12.3.0 MEGAHIT/1.2.9-GCCcore-12.3.0-Python-2.7.18 parallel/20230722-GCCcore-12.3.0 picard/2.25.1-Java-11 Pysam/0.20.0-GCC-12.3.0-Python-2.7.18 Python/2.7.18-GCCcore-12.3.0 SAMtools/1.18-GCC-12.3.0 scikit-learn/0.20.4-foss-2023a-Python-2.7.18
Required By
This version of CONCOCT is a direct dependent of: metaWRAP/1.4-20230728-foss-2023a-Python-2.7.18
Last modified on 4th March 2025