LTR_retriever 3.0.1-foss-2023a
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.Accessing LTR_retriever 3.0.1-foss-2023a
To load the module for LTR_retriever 3.0.1-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load LTR_retriever/3.0.1-foss-2023a
BEAR Apps Version
Architectures
EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the LTR_retriever website.
Dependencies
This version of LTR_retriever has a direct dependency on: BLAST+/2.14.1-gompi-2023a CD-HIT/4.8.1-GCC-12.3.0 foss/2023a HMMER/3.4-gompi-2023a Perl/5.36.1-GCCcore-12.3.0 RepeatMasker/4.1.7-p1-foss-2023a TRF/4.09.1-GCCcore-12.3.0
Required By
This version of LTR_retriever is a direct dependent of: RepeatModeler/2.0.6-foss-2023a
Last modified on 12th May 2025