LTR_retriever 3.0.1-foss-2023a

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Accessing LTR_retriever 3.0.1-foss-2023a

To load the module for LTR_retriever 3.0.1-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load LTR_retriever/3.0.1-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the LTR_retriever website.

Dependencies

This version of LTR_retriever has a direct dependency on: BLAST+/2.14.1-gompi-2023a CD-HIT/4.8.1-GCC-12.3.0 foss/2023a HMMER/3.4-gompi-2023a Perl/5.36.1-GCCcore-12.3.0 RepeatMasker/4.1.7-p1-foss-2023a TRF/4.09.1-GCCcore-12.3.0

Required By

This version of LTR_retriever is a direct dependent of: RepeatModeler/2.0.6-foss-2023a

Last modified on 12th May 2025