NGenomeSyn 1.41-GCC-12.3.0-Perl-5.36.1

NGenomeSyn, an easy-to-use and flexible tool, for publication-quality visualization of syntenic relationships (user-defined or generated by our custom script) and genomic features (e.g. repeats, structural variations, genes) on tens of genomes with high customization. NGenomeSyn allows its user to adjust default options for genome and link styles defined in the configuration file and simply adjusts options of moving, scaling, and rotation of target genomes, yielding a rich layout and publication-ready figure. A state-to-the-art figure enables users and readers to quickly catch key points hidden in the large-amount data at a galance. Moreover, NGenomeSyn could be applied on the visualization of relationships among other data with a similar input format(similar to sankey diagram).

Accessing NGenomeSyn 1.41-GCC-12.3.0-Perl-5.36.1

To load the module for NGenomeSyn 1.41-GCC-12.3.0-Perl-5.36.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load NGenomeSyn/1.41-GCC-12.3.0-Perl-5.36.1

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the NGenomeSyn website.

Dependencies

This version of NGenomeSyn has a direct dependency on: GCC/12.3.0 ImageMagick/7.1.1-15-GCCcore-12.3.0 SVG/2.87-GCC-12.3.0

Last modified on 2nd September 2024