RepeatModeler 2.0.6-foss-2023a
RepeatModeler is a de novo transposable element (TE) family identification and modeling package.Accessing RepeatModeler 2.0.6-foss-2023a
To load the module for RepeatModeler 2.0.6-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load RepeatModeler/2.0.6-foss-2023a
BEAR Apps Version
Architectures
EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the RepeatModeler website.
Dependencies
This version of RepeatModeler has a direct dependency on: CD-HIT/4.8.1-GCC-12.3.0 foss/2023a GenomeTools/1.6.5-GCC-12.3.0 Kent_tools/468-GCC-12.3.0 LTR_retriever/3.0.1-foss-2023a MAFFT/7.520-GCC-12.3.0-with-extensions Perl/5.36.1-GCCcore-12.3.0 RECON/1.08-GCC-12.3.0 RepeatMasker/4.1.7-p1-foss-2023a RepeatScout/1.0.7-GCC-12.3.0 RMBlast/2.14.1-gompi-2023a TRF/4.09.1-GCCcore-12.3.0 TWL-NINJA/1.00-cluster_only-GCC-12.3.0
Last modified on 12th May 2025