RepeatModeler 2.0.6-foss-2023a

RepeatModeler is a de novo transposable element (TE) family identification and modeling package.

Accessing RepeatModeler 2.0.6-foss-2023a

To load the module for RepeatModeler 2.0.6-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load RepeatModeler/2.0.6-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the RepeatModeler website.

Dependencies

This version of RepeatModeler has a direct dependency on: CD-HIT/4.8.1-GCC-12.3.0 foss/2023a GenomeTools/1.6.5-GCC-12.3.0 Kent_tools/468-GCC-12.3.0 LTR_retriever/3.0.1-foss-2023a MAFFT/7.520-GCC-12.3.0-with-extensions Perl/5.36.1-GCCcore-12.3.0 RECON/1.08-GCC-12.3.0 RepeatMasker/4.1.7-p1-foss-2023a RepeatScout/1.0.7-GCC-12.3.0 RMBlast/2.14.1-gompi-2023a TRF/4.09.1-GCCcore-12.3.0 TWL-NINJA/1.00-cluster_only-GCC-12.3.0

Last modified on 12th May 2025