dorado 0.8.3-foss-2023a-CUDA-12.1.1

Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.

Accessing dorado 0.8.3-foss-2023a-CUDA-12.1.1

To load the module for dorado 0.8.3-foss-2023a-CUDA-12.1.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load dorado/0.8.3-foss-2023a-CUDA-12.1.1

BEAR Apps Version

2023a

Architectures

EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the dorado website.

Dependencies

This version of dorado has a direct dependency on: CUDA/12.1.1 foss/2023a HDF5/1.14.0-gompi-2023a HTSlib/1.18-GCC-12.3.0 kineto/0.4.0-GCC-12.3.0 libaec/1.0.6-GCCcore-12.3.0 OpenSSL/1.1 PyTorch/2.1.2-foss-2023a-CUDA-12.1.1 zstd/1.5.5-GCCcore-12.3.0

Other Versions

These versions of dorado are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th December 2024