humann 4.0.0a1-foss-2023a

HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data. Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)?

Accessing humann 4.0.0a1-foss-2023a

To load the module for humann 4.0.0a1-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load humann/4.0.0a1-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• humann 4.0.0a1

More Information

For more information visit the humann website.

Dependencies

This version of humann has a direct dependency on: foss/2023a MetaPhlAn/4.1.1-foss-2023a Python/3.11.3-GCCcore-12.3.0

Last modified on 29th April 2025