metaMDBG 1.1-GCCcore-12.3.0

MetaMDBG is a fast and low-memory assembler for long and accurate metagenomics reads (e.g. PacBio HiFi, Nanopore r10.4). It is based on the minimizer de-Brujin graph (MDBG), which have been reimplemetend specifically for metagenomics assembly. MetaMDBG combines an efficient multi-k approach in minimizer-space for dealing with uneven species coverages, and a novel abundance-based filtering method for simplifying strain complexity.

Accessing metaMDBG 1.1-GCCcore-12.3.0

To load the module for metaMDBG 1.1-GCCcore-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load metaMDBG/1.1-GCCcore-12.3.0

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the metaMDBG website.

Dependencies

This version of metaMDBG has a direct dependency on: GCCcore/12.3.0 minimap2/2.26-GCCcore-12.3.0 zlib/1.2.13-GCCcore-12.3.0

Last modified on 12th December 2024