miniprot 0.13-GCCcore-12.3.0

Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species. Miniprot is similar to GeneWise and Exonerate in functionality but it can map proteins to whole genomes and is much faster at the residue alignment step.

Accessing miniprot 0.13-GCCcore-12.3.0

To load the module for miniprot 0.13-GCCcore-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load miniprot/0.13-GCCcore-12.3.0

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the miniprot website.

Dependencies

This version of miniprot has a direct dependency on: GCCcore/12.3.0 zlib/1.2.13-GCCcore-12.3.0

Required By

This version of miniprot is a direct dependent of: BUSCO/5.8.2-foss-2023a

Last modified on 18th June 2025