mixedploidy-entropy 2.0-iimpi-2023a

This is a model for quantifying population structure in autopolyploid and mixed-ploidy individuals using genotype-likelihood data. The repository contains the model written in C++ along with example files to help you get started with the analysis. The methods are described in Shastry, V., Adams, P.E., Lindtke, D., Mandeville, E.G., Parchman, T.L., Gompert, Z. and Buerkle, C.A. (2021), Model-based genotype and ancestry estimation for potential hybrids with mixed-ploidy. Molecular Ecology Resources 21: 1434-1451. https://doi.org/10.1111/1755-0998.13330

Accessing mixedploidy-entropy 2.0-iimpi-2023a

To load the module for mixedploidy-entropy 2.0-iimpi-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load mixedploidy-entropy/2.0-iimpi-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the mixedploidy-entropy website.

Dependencies

This version of mixedploidy-entropy has a direct dependency on: GSL/2.7-intel-compilers-2023.1.0 HDF5/1.14.0-iimpi-2023a iimpi/2023a Perl/5.36.1-GCCcore-12.3.0

Last modified on 12th November 2024