mrcfile 1.5.0-foss-2023a
mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data. It allows MRC files to be created and opened easily using a very simple API, which exposes the file’s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested. This library aims to allow users and developers to read and write standard- compliant MRC files in Python as easily as possible, and with no dependencies on any compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions.Accessing mrcfile 1.5.0-foss-2023a
To load the module for mrcfile 1.5.0-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load mrcfile/1.5.0-foss-2023a
BEAR Apps Version
Architectures
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the mrcfile website.
Dependencies
This version of mrcfile has a direct dependency on: foss/2023a Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a
Required By
This version of mrcfile is a direct dependent of: DynaMight/0.0.0.20240319.eef4aa6-foss-2023a-CUDA-12.1.1 lil-aretomo/0.1.0-foss-2023a RELION/5.0.0-foss-2023a-CUDA-12.1.1 relion-blush/0.0.1.20240529.7889199-foss-2023a-CUDA-12.1.1
Last modified on 3rd March 2025