nanoget 1.19.3-foss-2023a

Functions to extract information from Oxford Nanopore sequencing data and alignments

Accessing nanoget 1.19.3-foss-2023a

To load the module for nanoget 1.19.3-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load nanoget/1.19.3-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the nanoget website.

Dependencies

This version of nanoget has a direct dependency on: Biopython/1.83-foss-2023a foss/2023a nanomath/1.4.0-foss-2023a Pysam/0.22.0-GCC-12.3.0 Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of nanoget is a direct dependent of: NanoPlot/1.43.0-foss-2023a

Last modified on 18th March 2025