nanomonsv 0.8.0-foss-2023a

nanomonsv is a software for detecting somatic structural variations from paired (tumor and matched control) cancer genome sequence data.

Accessing nanomonsv 0.8.0-foss-2023a

To load the module for nanomonsv 0.8.0-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load nanomonsv/0.8.0-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• nanomonsv 0.8.0

More Information

For more information visit the nanomonsv website.

Dependencies

This version of nanomonsv has a direct dependency on: BEDTools/2.31.0-GCC-12.3.0 BWA/0.7.17-GCCcore-12.3.0 foss/2023a h5py/3.9.0-foss-2023a HTSlib/1.20-GCC-12.3.0 MAFFT/7.520-GCC-12.3.0-with-extensions minimap2/2.26-GCCcore-12.3.0 Pysam/0.22.0-GCC-12.3.0 Python/3.11.3-GCCcore-12.3.0 python-parasail/1.3.4-foss-2023a Racon/1.5.0-GCCcore-12.3.0 RepeatMasker/4.1.7-p1-foss-2023a SciPy-bundle/2023.07-gfbf-2023a

Last modified on 23rd September 2025