pod5-file-format 0.3.23-foss-2023a

POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format.

Accessing pod5-file-format 0.3.23-foss-2023a

To load the module for pod5-file-format 0.3.23-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load pod5-file-format/0.3.23-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• iso8601 2.1.0
• pod5 0.3.23
• vbz_h5py_plugin 1.0.1

More Information

For more information visit the pod5-file-format website.

Dependencies

This version of pod5-file-format has a direct dependency on: Arrow/14.0.1-gfbf-2023a Boost/1.82.0-GCC-12.3.0 build/1.0.3-foss-2023a flatbuffers/23.5.26-GCCcore-12.3.0 foss/2023a h5py/3.9.0-foss-2023a HDF5/1.14.0-gompi-2023a polars/0.20.2-gfbf-2023a pybind11/2.11.1-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 Python-bundle-PyPI/2023.06-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a tqdm/4.66.1-GCCcore-12.3.0 zstd/1.5.5-GCCcore-12.3.0

Last modified on 14th January 2025