starfile 0.5.6-foss-2023a
starfile is a Python implementation of the STAR file format designed principally for compatibility with RELION format STAR files. It allows STAR files to be created and opened easily using a very simple API, exposing data blocks as pandas DataFrame objects. This library aims to allow users and developers to read and write STAR files in Python as easily as possible as well as to encourage further analysis of data within the scientific Python (SciPy) ecosystem. You can use it interactively to inspect/explore files or in scripts and larger software packages to provide basic STAR file I/O functions.Accessing starfile 0.5.6-foss-2023a
To load the module for starfile 0.5.6-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load starfile/0.5.6-foss-2023a
BEAR Apps Version
Architectures
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- pandas 2.1.1
- starfile 0.5.6
More Information
For more information visit the starfile website.
Dependencies
This version of starfile has a direct dependency on: Arrow/14.0.1-gfbf-2023a foss/2023a hatchling/1.18.0-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a
Required By
This version of starfile is a direct dependent of: DynaMight/0.0.0.20240319.eef4aa6-foss-2023a-CUDA-12.1.1 RELION/5.0.0-foss-2023a-CUDA-12.1.1
Last modified on 3rd March 2025