Arriba 2.5.0-GCC-13.3.0

Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. It was developed for the use in a clinical research setting. Therefore, short runtimes and high sensitivity were important design criteria.

Accessing Arriba 2.5.0-GCC-13.3.0

To load the module for Arriba 2.5.0-GCC-13.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load Arriba/2.5.0-GCC-13.3.0

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Arriba website.

Dependencies

This version of Arriba has a direct dependency on: bzip2/1.0.8-GCCcore-13.3.0 GCC/13.3.0 HTSlib/1.21-GCC-13.3.0 libdeflate/1.20-GCCcore-13.3.0 STAR/2.7.11b-GCC-13.3.0 XZ/5.4.5-GCCcore-13.3.0 zlib/1.3.1-GCCcore-13.3.0

Last modified on 7th August 2025