CeleScope 2.9.0-foss-2024a

CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Accessing CeleScope 2.9.0-foss-2024a

To load the module for CeleScope 2.9.0-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load CeleScope/2.9.0-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• celescope 2.9.0
• mizani 0.13.5
• plotnine 0.14.6
• xopen 2.0.2

More Information

For more information visit the CeleScope website.

Dependencies

This version of CeleScope has a direct dependency on: anndata/0.10.9-foss-2024a Biopython/1.84-gfbf-2024a cutadapt/5.1-GCCcore-13.3.0 Cython/3.0.10-GCCcore-13.3.0 foss/2024a Kaleido/0.2.1-GCCcore-13.3.0 leidenalg/0.10.2-foss-2024a matplotlib/3.9.2-gfbf-2024a plotly.py/5.24.1-GCCcore-13.3.0 Pysam/0.22.1-GCC-13.3.0 Python/3.12.3-GCCcore-13.3.0 Python-bundle-PyPI/2024.06-GCCcore-13.3.0 python-igraph/0.11.9-foss-2024a scanpy/1.9.8-foss-2024a scikit-learn/1.5.2-gfbf-2024a SciPy-bundle/2024.05-gfbf-2024a statsmodels/0.14.4-gfbf-2024a

Last modified on 28th November 2025